Pathogen Detection (BETA)
HealthData.Gov
Updated Oct 29, 2026
About this dataset
NCBI Pathogen Detection integrates bacterial pathogen genomic sequences originating in food, environmental sources, and patients. It quickly clusters and identifies related sequences to uncover potential food contamination sources, helping public health scientists investigate foodborne disease outbreaks.
Data and resources (6)
- HTML
Isolates Browser
Modified Jun 29, 2026
- HTML
Pathogen Detection Microbial Browser for Identification of Genetic and Genomic Elements (MicroBIGG-E)
This interface contains a subset of the isolates from the Isolate Browser that have genomic sequence data available in GenBank and have genotypes identified by AMRFinderPlus at the time they were analyzed.
Modified Jun 29, 2026
- HTML
Reference Gene Catalog
Modified Jun 29, 2026
- HTML
Reference HMM Catalog
Reference set of hidden Markov models (HMMs) used by AMRFinderPlus to identify protein families in conjunction with Reference Gene Catalog
Modified Jun 29, 2026
- HTML
Isolates with antibiotic resistant phenotypes
antibiogram[filter] applied to BioSample
Modified Jun 29, 2026
- HTML
Download analysis results (FTP)
Modified Jun 29, 2026